#GENODIVE GENETIC KINSHIP HOW TO#
#GENODIVE GENETIC KINSHIP SOFTWARE#

Multiple data formats GenoDive can handle three different types of data: markerdata (e.g. Calculations always take place in the background, so you can perform other analyses while waiting for the results of a more lengthy analysis. GenoDive automatically detects the number of processors present in the computer and divides lengthy tasks over them all.

However, most programs are able to use only a part of the power of these new computers as they employ only a single processor at a time.

simultaneously! All Macs that are sold nowadays contain multiple processor cores. Included inferences are among others: a flexible Analysis of Molecular Variance, estimation of standardised coefficients of population differentiation, k- means clustering of populations using a simulated annealing approach, assigning genotypic identity (clones) to individuals, testing for clonal reproduction, testing Hardy-Weinberg equilibrium, calculation of the hybrid index for individuals, and different types of Mantel tests. Best of all, GenoDive works on a Mac! For questions about GenoDive or for reporting bugs, contact me at: Many different types of inferences GenoDive features many different types of statistical inferences, some of which are not available in any other population genetics software. GenoDive can handle genetic data as well as distance matrices and ecological data, enabling you to combine data from several different sources into a single analysis. It features an intuitive and clutter-free user-interface, behind which lie powerful statistical tools, including several analyses that are not available in other programs.

#GENODIVE GENETIC KINSHIP HOW TO#

8 Format of a GenoDive input file! 9 Supported Data Types! 11 Importing data from other programs! 12 Converting Data! 13 Transformation of genetic marker data! 15 Transformation of distances and ecological data! 17 Fill in Missing Data! 19 Setting Population Groups! 21 Creating a matrix of distance classes! 23 Shuffle Data! 25 Interface topics! Understanding the interface! 28 The Inspector panel! 29 Setting the preferences! 30 Searching! 31 Selecting, including, and excluding data! 32 Special include options! 34 Viewing the data as text and as a matrix! 36 Multithreaded analyses! 38 Saving multiple datasets or results! 39 Available analyses! Allele frequencies! 41 Analysis of Molecular Variance! 42 Assign Clones! 44 Assign Clones - Step 1: Distances! 45 Assign Clones - Step 2: Threshold! 47ДЈ Assign Clones - Step 3: Test for Clonal Structure! 49 Assign Clones - Last Step: Output Options! 51 Calculate Distances! 52 Genetic Distances! 53 Non-Genetic Distances! 56 Estimating Clonal Diversity! 57 Clonal Diversity (background)! 58 Compare Groups! 60 Correction of allele dosage in polyploids! 62 Genetic Diversity! 63 G-statistics! 65 Hardy-Weinberg equilibrium! 67 Hybrid Index! 68 K-Means clustering! 69 K-Means clustering (background)! 71 Mantel tests! 73 Pairwise population differentiation! 75 Population Assignment! 77 Principal Components Analysis! 79 Spatial Autocorrelation! 81 Miscellaneous! How to cite GenoDive:! 84 Requirements! 85 License! 86 Version History! 87 Cited References:! 92 GenoDive Manual 3ДҐ Discover GenoDive GenoDive is a user-friendly program to perform population genetics analyses. 4 Discover GenoDive! 5 Known Issues and Limitations! 7 Data topics!. Universiteit van AmsterdamДў Contents: About GenoDive!.

#GENODIVE GENETIC KINSHIP SOFTWARE#

Software for analysis of population genetic data April 2013 Patrick Meirmans I.B.E.D.

Genodive genetic kinship